Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9659628_9660655_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9659628 - 9660655

Intron Length:

1028

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACATTC

5'SS Class:

major

3'SS Sequence:

ATCAGCTCTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TGTATGCTAATA

Flanking Amino Acid:

VRFSPLMTSAVLGTEIQDVD

Intron Amino Acid Position:

448

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

1.1

75.9

34.8

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

71.2

0.48

0.9

66.3

Minor 5ss

-0.2

2.9

68.1

42.9

Minor BPS

45.1

-0.3

2.3

61.08

39.1

Associated Gene:

Gene:

PDXDC1

Ensembl Gene ID:

ENSAPLG00000005252

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005464

9640870 - 9666500

25631