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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9659654_9662152_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9659654 - 9662152
Intron Length:
2499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAAAACT
5'SS Class:
major
3'SS Sequence:
TTTAAAAACTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTTACTTGACA
Flanking Amino Acid:
AGNIHFTQSLYPGIVEPSSW
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.1
66.2
37
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
52.9
0.07
1.2
55.3
42.8
Minor 5ss
38
-1.3
3.2
56.5
41.8
Minor BPS
74.3
0.76
1.4
82.14
31.8

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035080
9644859 - 9662185
17327