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Intron Name: Anas_platyrhynchos_platyrhynchos_15_9660840_9661506_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9660840 - 9661506

Intron Length:

667

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTATTTTCT

5'SS Class:

weak_major

3'SS Sequence:

ACAGCTATCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAA

U12 Branch Point Sequence:

TTTGGTTTGAAG

Flanking Amino Acid:

PGLGVVRYIFHDGKNDDKQE

Intron Amino Acid Position:

509

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.4

0.22

1.1

38.3

Major BPS

69.4

0.48

1.2

63.4

44.3

Major PPT

62.2

0.28

54.1

39.5

Minor 5ss

54.3

0.14

2.3

73.5

36.5

Minor BPS

47.3

-0.3

58.91

43.4

Associated Gene:

Gene:

PDXDC1

Ensembl Gene ID:

ENSAPLG00000005252

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005464

9640870 - 9666500

25631