Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9661611_9662461_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9661611 - 9662461

Intron Length:

851

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAACTGCA

5'SS Class:

major

3'SS Sequence:

CCTATGTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTCCCTATGT

Flanking Amino Acid:

ELESDLTFSLGPEFGGQKNC

Intron Amino Acid Position:

544

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.2

40.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.54

0.9

67.3

37.9

Minor 5ss

38.1

-1.3

3.1

41.8

44.8

Minor BPS

49.9

0.07

2.2

76.35

46.1

Associated Gene:

Gene:

PDXDC1

Ensembl Gene ID:

ENSAPLG00000005252

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005464

9640870 - 9666500

25631