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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_96640_97997_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
96640 - 97997
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
ENELELFRKTMDLIILSENG
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
NSMCE1
Ensembl Gene ID:
ENSAPLG00000015098
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015761
93912 - 100687
6776