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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9664506_9664601_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9664506 - 9664601
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GTGTCCTTCACA
Flanking Amino Acid:
KANEERLLEEGLLRQIPVVG
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
74.9
0.56
0.9
68.4
37.4
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
69
0.59
1.8
76.05
41.3

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005464
9640870 - 9666500
25631