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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9664699_9665896_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9664699 - 9665896
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
PKGRTFNLTAGSLESTESTY
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.6
0.71
0.8
75.1
34.6
Minor 5ss
35.1
-1.7
3.5
50.3
46.3
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005464
9640870 - 9666500
25631