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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9666002_9666249_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9666002 - 9666249
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CAACACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTCTCCCAACA
Flanking Amino Acid:
TSSLTKQRLPGQKIFKRSLR
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
69.6
0.44
1
61.7
39
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
50.5
0.01
1.9
68.46
37.2

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005464
9640870 - 9666500
25631