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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9668631_9668812_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9668631 - 9668812
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTGGC
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGCTCTCATCT
Flanking Amino Acid:
LEQDDQQILENLSTSPLAEP
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.2
62.4
43.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
37.5
-1.4
3.4
53.1
44.1
Minor BPS
52
0.14
1.8
73.34
43.5

Associated Gene:

Gene:
NTAN1
Ensembl Gene ID:
ENSAPLG00000004890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005064
9668451 - 9674348
5898