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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9668927_9669498_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9668927 - 9669498
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTGTCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
CTTCCTGTAAGT
Flanking Amino Acid:
RSAHILTGARLTNIYDAKKE
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
80.3
0.68
0.9
73
37.5
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
48.7
-0
2.3
72.56
44.8

Associated Gene:

Gene:
NTAN1
Ensembl Gene ID:
ENSAPLG00000004890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005064
9668451 - 9674348
5898