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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9669597_9669918_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9669597 - 9669918
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTGTTTAAACT
Flanking Amino Acid:
DIHFPIIYGIAVNVKTAEIF
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78
0.63
0.9
71.2
39.6
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
57.1
0.3
1.8
75.46
41.9

Associated Gene:

Gene:
NTAN1
Ensembl Gene ID:
ENSAPLG00000004890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005064
9668451 - 9674348
5898