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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9670824_9672120_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9670824 - 9672120
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
GTTGTTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TCACTCTTATAC
Flanking Amino Acid:
LSQKLTNQLLRAFDLQPDDV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.2
31.8
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
72
0.5
1
66.2
40.8
Minor 5ss
42.3
-0.8
2.7
52.3
39.5
Minor BPS
49
-0
1.7
57.58
40.8

Associated Gene:

Gene:
NTAN1
Ensembl Gene ID:
ENSAPLG00000004890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005064
9668451 - 9674348
5898