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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9672195_9673280_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9672195 - 9673280
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCTCA
5'SS Class:
major
3'SS Sequence:
CCATCTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTCCTGTTATT
Flanking Amino Acid:
KSFSNSADYGRLELHLVGGF
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.6
39.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
65.8
0.36
1
65.6
35.8
Minor 5ss
39.5
-1.2
2.8
48.8
46.9
Minor BPS
49
0.01
2.3
76.99
39.9

Associated Gene:

Gene:
NTAN1
Ensembl Gene ID:
ENSAPLG00000004890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005064
9668451 - 9674348
5898