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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9673390_9674044_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9673390 - 9674044
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTAA
5'SS Class:
major
3'SS Sequence:
TTTCACACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTGTCATTAACT
Flanking Amino Acid:
TCHLVVLRHTGSGATCLTHC
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.9
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.2
0.45
0.8
67.7
33.3
Minor 5ss
54.1
0.14
2.1
66.7
44.7
Minor BPS
74
0.83
1.6
86.34
39.1

Associated Gene:

Gene:
NTAN1
Ensembl Gene ID:
ENSAPLG00000004890
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005064
9668451 - 9674348
5898