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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_967456_971466_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
967456 - 971466
Intron Length:
4011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGTAA
5'SS Class:
major
3'SS Sequence:
TTCCGCCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTCCGCCTACTA
Flanking Amino Acid:
TEVLSEDLLQIERRLDTVRS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
64.5
37.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
66.5
0.37
0.9
59.3
36.9
Minor 5ss
47.7
-0.2
2.9
63.9
47.7
Minor BPS
42.8
-0.5
2.2
56.96
42.8

Associated Gene:

Gene:
ARHGAP17
Ensembl Gene ID:
ENSAPLG00000010084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044222
953647 - 991704
38058
ENSAPLT00000029462
953647 - 986632
32986
ENSAPLT00000010551
965702 - 991704
26003