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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9677846_9678355_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9677846 - 9678355
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATCTTT
5'SS Class:
major
3'SS Sequence:
TACATTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCATTTTACAT
Flanking Amino Acid:
LENLKKPIKRGTSEDEDDDF
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
71.6
40.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.9
0.56
1
69.7
40.2
Minor 5ss
49.4
-0
2.8
65.4
45.8
Minor BPS
49.6
0.05
1.7
68.85
42.4

Associated Gene:

Gene:
RRN3
Ensembl Gene ID:
ENSAPLG00000004537
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004718
9677687 - 9691725
14039