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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9681286_9682138_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9681286 - 9682138
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTCTCCATTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
FLARAKFIPVVTVKACLDLL
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
66.1
40.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79
0.65
0.8
73.6
29.9
Minor 5ss
42.5
-0.8
2.8
53.5
43.7
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
RRN3
Ensembl Gene ID:
ENSAPLG00000004537
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004718
9677687 - 9691725
14039