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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9684396_9684807_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9684396 - 9684807
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTGGTTAT
5'SS Class:
major
3'SS Sequence:
TTTTATCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATCAAAC
Flanking Amino Acid:
KSAEEGLFAMEEDEERKGNK
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
68.8
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.7
0.56
1
71
38.6
Minor 5ss
37
-1.5
3.1
46.9
43
Minor BPS
50.5
-0
1.9
67.66
37.1

Associated Gene:

Gene:
RRN3
Ensembl Gene ID:
ENSAPLG00000004537
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004718
9677687 - 9691725
14039