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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9684904_9685424_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9684904 - 9685424
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCAACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGTTTGCAACT
Flanking Amino Acid:
LIVEKLLKLDVSTPQQDIED
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
70.8
0.47
0.9
64.4
36.7
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
49.5
0.04
2.2
75.09
42.3

Associated Gene:

Gene:
RRN3
Ensembl Gene ID:
ENSAPLG00000004537
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004718
9677687 - 9691725
14039