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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9685524_9687125_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9685524 - 9687125
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TATCCCTTAATT
Flanking Amino Acid:
PFINKSERTLECYVHNLLRV
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.7
34.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81.5
0.71
0.9
76.5
37.7
Minor 5ss
31.8
-2.1
3.3
40.1
39.9
Minor BPS
83.3
1.12
1
91.11
31.6

Associated Gene:

Gene:
RRN3
Ensembl Gene ID:
ENSAPLG00000004537
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004718
9677687 - 9691725
14039