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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9687196_9687676_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9687196 - 9687676
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTGTAC
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
ALQTVVRYVPSTLQFLMPIL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
44.7
-0.3
1.3
40.7
39.7
Major PPT
88.1
0.86
0.8
84.7
30.1
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
RRN3
Ensembl Gene ID:
ENSAPLG00000004537
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004718
9677687 - 9691725
14039