Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9687741_9688695_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9687741 - 9688695

Intron Length:

955

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATCGAT

U12 Branch Point Sequence:

CAATCGATAACA

Flanking Amino Acid:

DISDSDDDDENLSENFNTCH

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.8

23.7

Major BPS

57.1

0.18

1.2

56.2

40.7

Major PPT

87.5

0.84

0.6

81.5

30.5

Minor 5ss

35.6

-1.6

2.8

42.6

38.4

Minor BPS

48.1

-0.1

2.3

62.5

43.2

Associated Gene:

Gene:

RRN3

Ensembl Gene ID:

ENSAPLG00000004537

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004718

9677687 - 9691725

14039