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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9688756_9689209_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9688756 - 9689209
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TCATTTTCGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCCAATAATG
Flanking Amino Acid:
LRMIVSQFVPPRITIREDDV
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
76.7
34.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.4
0.48
1
69.8
36.4
Minor 5ss
43.4
-0.7
2.9
58.8
40.3
Minor BPS
53.4
-0
1.9
67.5
39.7

Associated Gene:

Gene:
RRN3
Ensembl Gene ID:
ENSAPLG00000004537
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004718
9677687 - 9691725
14039