Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9689340_9689424_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9689340 - 9689424

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTATGTATC

5'SS Class:

major

3'SS Sequence:

TACTTGCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

CTGTTTTTACTT

Flanking Amino Acid:

DFDQLVSLLLKLPWLRRSRE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

73.4

35.4

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

80.5

0.69

0.9

77.1

36.8

Minor 5ss

48.2

-0.2

2.4

64.5

34.6

Minor BPS

56.4

0.28

1.6

70.08

42.4

Associated Gene:

Gene:

RRN3

Ensembl Gene ID:

ENSAPLG00000004537

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004718

9677687 - 9691725

14039