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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9689515_9691320_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9689515 - 9691320
Intron Length:
1806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTCTGCTTATTT
Flanking Amino Acid:
KHQLSDPDIKDAQIINWLHE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.8
81.8
38.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
79.5
0.66
0.8
77.7
35.7
Minor 5ss
35.9
-1.6
3
50.5
45.8
Minor BPS
58.9
0.36
2
79.24
43.6

Associated Gene:

Gene:
RRN3
Ensembl Gene ID:
ENSAPLG00000004537
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004718
9677687 - 9691725
14039