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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9705471_9707790_R

Intron Information:

Intron Rank:
7
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
9705471 - 9707790
Intron Length:
2320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
AAAAACAGTGGAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTGATC
Flanking Amino Acid:
QPVVDRKEGEMFVIWKMEPN
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
41.6
-0.4
1.7
33.4
40.2
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
72.5
0.69
1.5
83.03
30

Associated Gene:

Gene:
RSL1D1
Ensembl Gene ID:
ENSAPLG00000004451
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042890
9705093 - 9713199
8107
ENSAPLT00000036540
9705093 - 9712128
7036
ENSAPLT00000026134
9705093 - 9713960
8868