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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9708107_9708705_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9708107 - 9708705
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTCTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCATATATAAAT
Flanking Amino Acid:
TLPVTNKGCCYTARIGHTGM
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.3
37.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.2
0.81
0.8
83.9
31.1
Minor 5ss
41.2
-1
2.8
53.2
38.8
Minor BPS
48.5
-0
1.9
68.17
42.1

Associated Gene:

Gene:
RSL1D1
Ensembl Gene ID:
ENSAPLG00000004451
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004581
9705093 - 9710424
5332
ENSAPLT00000042890
9705093 - 9713199
8107
ENSAPLT00000036540
9705093 - 9712128
7036
ENSAPLT00000026134
9705093 - 9713960
8868