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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9709098_9709698_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9709098 - 9709698
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTACTTTCATT
Flanking Amino Acid:
TQNGITNVSQVISYKTLKKE
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.7
0.69
0.8
74.4
34.3
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
59
0.36
1.8
77.11
39.8

Associated Gene:

Gene:
RSL1D1
Ensembl Gene ID:
ENSAPLG00000004451
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036540
9705093 - 9712128
7036
ENSAPLT00000026134
9705093 - 9713960
8868
ENSAPLT00000024230
9706655 - 9710510
3856
ENSAPLT00000042890
9705093 - 9713199
8107
ENSAPLT00000004581
9705093 - 9710424
5332
ENSAPLT00000036913
9705093 - 9712951
7859