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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9709838_9710145_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9709838 - 9710145
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
GTCCTCGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCCATCTTATGT
Flanking Amino Acid:
KIPRVEQVIKIPLPHSIRTE
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
66
39.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.1
0.41
0.9
61.9
34.8
Minor 5ss
33.5
-1.9
3.4
46.4
42.4
Minor BPS
47.8
-0
1.9
63.37
47.1

Associated Gene:

Gene:
RSL1D1
Ensembl Gene ID:
ENSAPLG00000004451
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004581
9705093 - 9710424
5332