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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9709838_9710160_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9709838 - 9710160
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGA|GCAGGTCAT
5'SS Class:
major
3'SS Sequence:
GTCCTCGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCCATCTTATGT
Flanking Amino Acid:
LVTVWKIPRVEPLPHSIRTE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
61.7
42.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.1
0.41
0.9
61.9
34.8
Minor 5ss
25.4
-2.8
4.1
36.6
41.7
Minor BPS
47.8
-0
1.9
63.37
47.1

Associated Gene:

Gene:
RSL1D1
Ensembl Gene ID:
ENSAPLG00000004451
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024230
9706655 - 9710510
3856
ENSAPLT00000042890
9705093 - 9713199
8107
ENSAPLT00000036913
9705093 - 9712951
7859
ENSAPLT00000036540
9705093 - 9712128
7036
ENSAPLT00000026134
9705093 - 9713960
8868