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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9764718_9768380_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9764718 - 9768380
Intron Length:
3663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
AATTCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTGTTAAAA
Flanking Amino Acid:
RKEIASDSDSRVTCLCAQFE
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.6
0.6
1
69.9
40.5
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
56.2
0.19
2.1
71.75
40.6

Associated Gene:

Gene:
SNX29
Ensembl Gene ID:
ENSAPLG00000004050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004166
9764686 - 9888076
123391