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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9773773_9775246_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9773773 - 9775246
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
TTTCAAACTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTCCTTTCAAA
Flanking Amino Acid:
HMLLADKNRLSVFYEDWSFM
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
71.8
0.49
0.9
68.4
37.2
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
57.6
0.23
1.9
73.99
37.5

Associated Gene:

Gene:
SNX29
Ensembl Gene ID:
ENSAPLG00000004050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004166
9764686 - 9888076
123391