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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9776437_9778284_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9776437 - 9778284
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAAAT
Flanking Amino Acid:
LPVLSKNVNADLKSKKDRKK
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72
0.49
0.9
63
43.6
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
64.2
0.52
1.7
84.29
36.6

Associated Gene:

Gene:
SNX29
Ensembl Gene ID:
ENSAPLG00000004050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004166
9764686 - 9888076
123391