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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_977662_978038_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
977662 - 978038
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTA
Flanking Amino Acid:
MLLETGMREEGLFRIAAGAS
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.7
0.8
0.9
81.6
34.7
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
62
0.37
1.5
71.06
35.7

Associated Gene:

Gene:
ARHGAP17
Ensembl Gene ID:
ENSAPLG00000010084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044222
953647 - 991704
38058
ENSAPLT00000029462
953647 - 986632
32986
ENSAPLT00000010551
965702 - 991704
26003