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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9779736_9789927_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9779736 - 9789927
Intron Length:
10192

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCCAACAGA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTGTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGGAAATTAACC
Flanking Amino Acid:
QTGKYFNSISYELRQAIVAM
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.4
54.7
41.8
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
25.6
-2.8
3.8
35.4
41.3
Minor BPS
50.3
-0
1.8
62.69
41.8

Associated Gene:

Gene:
SNX29
Ensembl Gene ID:
ENSAPLG00000004050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004166
9764686 - 9888076
123391