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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_978779_979238_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
978779 - 979238
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ATGTAATGGATT
Flanking Amino Acid:
SLYEEWTQAANIQDQDKKLQ
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
45.4
-0.2
1.9
64.22
40

Associated Gene:

Gene:
ARHGAP17
Ensembl Gene ID:
ENSAPLG00000010084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044222
953647 - 991704
38058
ENSAPLT00000029462
953647 - 986632
32986
ENSAPLT00000010551
965702 - 991704
26003