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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9789992_9791343_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9789992 - 9791343
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGTTTTC
5'SS Class:
major
3'SS Sequence:
TACCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GGTGTTCTAACA
Flanking Amino Acid:
NRKDELEEQNRSLRNLLDGE
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
75.1
36
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.5
0.71
0.8
73.1
37
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
49.3
-0
1.7
60.91
39.1

Associated Gene:

Gene:
SNX29
Ensembl Gene ID:
ENSAPLG00000004050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004166
9764686 - 9888076
123391