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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9791473_9801117_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9791473 - 9801117
Intron Length:
9645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATAAACA
Flanking Amino Acid:
RHATKVQALARENEVLKVQL
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.9
0.63
1
75
38
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
63
0.4
1.9
80.01
35.9

Associated Gene:

Gene:
SNX29
Ensembl Gene ID:
ENSAPLG00000004050
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004166
9764686 - 9888076
123391