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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_980698_980843_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
980698 - 980843
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
CTCTTTTTACCA
Flanking Amino Acid:
IQHADWFFPGDQDFNVSGAF
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
82.3
0.73
0.8
77
35.9
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
57.7
0.24
1.6
65.59
41.9

Associated Gene:

Gene:
ARHGAP17
Ensembl Gene ID:
ENSAPLG00000010084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044222
953647 - 991704
38058
ENSAPLT00000029462
953647 - 986632
32986
ENSAPLT00000010551
965702 - 991704
26003