Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_981001_982245_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

981001 - 982245

Intron Length:

1245

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTTCTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAC

U12 Branch Point Sequence:

GTGTGTTTACTC

Flanking Amino Acid:

VMEGDLLKKESFGVKVMDFQ

Intron Amino Acid Position:

494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

Major BPS

71.4

0.53

1.1

63.4

Major PPT

84.6

0.78

0.6

80.9

24.3

Minor 5ss

53.1

0.1

2.3

69.7

41.2

Minor BPS

47.6

-0.2

58.03

41.9

Associated Gene:

Gene:

ARHGAP17

Ensembl Gene ID:

ENSAPLG00000010084

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044222

953647 - 991704

38058

ENSAPLT00000029462

953647 - 986632

32986

ENSAPLT00000010551

965702 - 991704

26003