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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_98145_99117_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98145 - 99117
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATCATTT
Flanking Amino Acid:
IFVEDKWLSERNGEYTLHTR
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
81.8
0.72
0.7
81.5
30.5
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
47.5
-0.1
2
67.82
43.2

Associated Gene:

Gene:
NSMCE1
Ensembl Gene ID:
ENSAPLG00000015098
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015761
93912 - 100687
6776