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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_982489_984513_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
982489 - 984513
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GGATTTTTAATT
Flanking Amino Acid:
QLQSQGNEDVSTSKSKDNAS
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.2
0.86
0.8
85.7
33.4
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
67.3
0.62
1.2
73.78
37.2

Associated Gene:

Gene:
ARHGAP17
Ensembl Gene ID:
ENSAPLG00000010084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044222
953647 - 991704
38058
ENSAPLT00000029462
953647 - 986632
32986
ENSAPLT00000010551
965702 - 991704
26003