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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_985635_986608_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
985635 - 986608
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GATGCCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAT
U12 Branch Point Sequence:
TGTTGCCTAATA
Flanking Amino Acid:
PTQTASKIVTGGDGYCE*
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
64.2
0.35
1.3
65.8
39.5
Major PPT
69
0.43
1
61
39.9
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
56
0.18
2.1
72.87
39.2

Associated Gene:

Gene:
ARHGAP17
Ensembl Gene ID:
ENSAPLG00000010084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029462
953647 - 986632
32986