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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9940738_9958776_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9940738 - 9958776
Intron Length:
18039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
QEIMEKFHKAGIKAVFSGHY
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004033
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023321
9940505 - 9980534
40030
ENSAPLT00000022842
9940505 - 9983313
42809
ENSAPLT00000018198
9940505 - 9983386
42882
ENSAPLT00000033794
9940505 - 9982547
42043
ENSAPLT00000004134
9940505 - 9980512
40008
ENSAPLT00000030114
9940505 - 9982936
42432