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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9978755_9983271_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9978755 - 9983271
Intron Length:
4517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTACGGCTC
5'SS Class:
weak_major
3'SS Sequence:
TTTAGATGATGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTCCCTGTATT
Flanking Amino Acid:
EVGLLLWRSAYEWKGPFYFI
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.2
52.2
44.7
Major BPS
79.2
0.72
1
75
40
Major PPT
47.3
-0.1
1.8
55.9
47.7
Minor 5ss
37.2
-1.5
3.7
60
44.7
Minor BPS
60.9
0.42
1.8
82.69
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004033
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022842
9940505 - 9983313
42809