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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9978763_9980433_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9978763 - 9980433
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAATTGGA
5'SS Class:
major
3'SS Sequence:
CCTGTATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TTTCCCTGTATT
Flanking Amino Acid:
MDHFTSLNKLYDEYEWKGPF
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
67.3
38.1
Major BPS
68.7
0.46
1
71.3
34
Major PPT
76.1
0.59
0.8
73.4
36.1
Minor 5ss
34.6
-1.8
3.2
44.7
43.4
Minor BPS
60.9
0.42
1.8
82.69
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004033
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004134
9940505 - 9980512
40008