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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9978793_9982525_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9978793 - 9982525
Intron Length:
3733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCAAACG
5'SS Class:
major
3'SS Sequence:
TAAGTTTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTCTTTATAA
Flanking Amino Acid:
MYTCSAGVLHFFFPVFL
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1
58.6
40.3
Major BPS
100
1.24
0.5
100
0
Major PPT
71.3
0.48
0.9
63
43.6
Minor 5ss
26.6
-2.7
3
32.1
42.1
Minor BPS
61.4
0.36
1.7
72.15
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004033
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033794
9940505 - 9982547
42043