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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_999292_999620_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
999292 - 999620
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTGC
5'SS Class:
major
3'SS Sequence:
CCCACCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TCTGCCCCACCT
Flanking Amino Acid:
LSPLQLALDSEAVWPIPSHL
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.6
42.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
66.7
0.38
0.8
57
33.3
Minor 5ss
42.5
-0.8
3.2
59.3
45.4
Minor BPS
45.5
-0.2
2.2
68.6
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029805
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045398
999007 - 1002473
3467