About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1011057_1051704_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1011057 - 1051704
Intron Length:
40648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATCACT
Flanking Amino Acid:
IGWMSNHTDFDFAVVLTFLM
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
100
1.24
0.5
100
0
Major PPT
93.1
0.97
0.7
88.7
26.7
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
63.1
0.49
2
88.42
36.6

Associated Gene:

Gene:
SLC15A4
Ensembl Gene ID:
ENSAPLG00000011741
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024868
1009996 - 1073101
63106