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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10147234_10150741_F

Intron Information:

Intron Rank:
145341
Intron Class:
major
Intron Phase:
Intron Coordinates:
10147234 - 10150741
Intron Length:
3508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAACTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TATTTTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.7
37.6
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.3
0.61
0.9
67.9
42.5
Minor 5ss
35.9
-1.6
3.3
46.1
49.1
Minor BPS
64
0.52
2
84.25
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028352
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048451
10146648 - 10175105
28458